ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5kl9D1 - ECOD Domain | ECOD

ECOD/Domains/e5kl9D1

e5kl9D1

UID: 001860423

PDB

Range: D:4-132
PDB: 5KL9 chain D(all domains)
UniProt: P0A8Z5 (all domains)
Gene: ybgC

Molecule: Acyl-CoA thioester hydrolase YbgC

3D Structure

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Related Domains

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Classification

AArchitecturea+b two layers(a.11)

XX-groupThioesterase/thiol ester dehydrase-isomerase-like(222)

HH-groupThioesterase/thiol ester dehydrase-isomerase(222.1)

TT-groupThioesterase/thiol ester dehydrase-isomerase(222.1.1)

FFamily4HBT(222.1.1.4)

Ligands

in contact, ≤ 4 Å

Coenzyme ACOA
drugDrugBank DB01992

+ 2 additives (Glycerin, Sulfate ion)

GlycerinGOL
DrugBank DB09462

Pfam Families

Thioesterase superfamily

ClanCL0050HotDog

External Links

ECOD PDB View: 5KL9 RCSB PDB: 5KL9 PDBe: 5KL9 UniProt: P0A8Z5

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ion

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.