ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ydeA1 - ECOD Domain | ECOD

ECOD/Domains/e4ydeA1

e4ydeA1

UID: 001860471

PDB

Range: A:3-304
PDB: 4YDE chain A(all domains)

Molecule: Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha

3D Structure

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Related Domains

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Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyPPTA(109.4.1.18)

Ligands

in contact, ≤ 4 Å

(3R,7S)-3,7,11-trimethyldodecyl trihydrogen diphosphate4C7

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Protein prenyltransferase alpha subunit repeat

ClanCL0020TPR

External Links

ECOD PDB View: 4YDE RCSB PDB: 4YDE PDBe: 4YDE

Downloads

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