ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5js9C2 - ECOD Domain | ECOD

ECOD/Domains/e5js9C2

e5js9C2

UID: 001866378

PDB

Range: C:33-119,C:202-254,C:471-501
PDB: 5JS9 chain C(all domains)
UniProt: Q2N0S6 (all domains)
Gene: env

Molecule: gp120

3D Structure

Loading viewer...

Related Domains

Browse other domains in GP120 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupgp120 inner domain(1061)

HH-groupgp120 inner domain(1061.1)

TT-groupgp120 inner domain(1061.1.1)

FFamilyGP120(1061.1.1.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Envelope glycoprotein GP120

External Links

ECOD PDB View: 5JS9 RCSB PDB: 5JS9 PDBe: 5JS9 UniProt: Q2N0S6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure