ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5cnxA1 - ECOD Domain | ECOD

ECOD/Domains/e5cnxA1

e5cnxA1

UID: 001866993

PDB

Range: A:1-125
PDB: 5CNX chain A(all domains)
UniProt: P76524 (all domains)
Gene: ypdF

Molecule: Aminopeptidase YpdF

3D Structure

Loading viewer...

Related Domains

Browse other domains in Creatinase_N →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupCreatinase/prolidase N-terminal domain(2484.3)

TT-groupCreatinase/prolidase N-terminal domain(2484.3.1)

FFamilyCreatinase_N(2484.3.1.1)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01321Creatinase_N

Creatinase/Prolidase N-terminal domain

ClanCL0356AMP_N-like

External Links

ECOD PDB View: 5CNX RCSB PDB: 5CNX PDBe: 5CNX UniProt: P76524

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure