ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5cnxC2 - ECOD Domain | ECOD

ECOD/Domains/e5cnxC2

e5cnxC2

UID: 001866998

PDB

Range: C:1-125
PDB: 5CNX chain C(all domains)
UniProt: P76524 (all domains)
Gene: ypdF

Molecule: Aminopeptidase YpdF

3D Structure

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Related Domains

Browse other domains in Creatinase_N →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupCreatinase/prolidase N-terminal domain(2484.3)

TT-groupCreatinase/prolidase N-terminal domain(2484.3.1)

FFamilyCreatinase_N(2484.3.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Cacodylate ion)

Cacodylate ionCAC
within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01321Creatinase_N

Creatinase/Prolidase N-terminal domain

ClanCL0356AMP_N-like

External Links

ECOD PDB View: 5CNX RCSB PDB: 5CNX PDBe: 5CNX UniProt: P76524

Downloads

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