ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5co4A1 - ECOD Domain | ECOD

ECOD/Domains/e5co4A1

e5co4A1

UID: 001867002

PDB

Range: A:1-149
PDB: 5CO4 chain A(all domains)
UniProt: Q72G96 (all domains)
Gene: TT_C1952

Molecule: Putative tRNA (cytidine(34)-2'-O)-methyltransferase

3D Structure

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Related Domains

Browse other domains in SpoU_methylase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilySpoU_methylase(2488.1.1.1)

Ligands

in contact, ≤ 4 Å

5'-S-methyl-5'-thioadenosineMTA
drugDrugBank DB02282

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer.

Pfam Families

PF00588SpoU_methylase

SpoU rRNA Methylase family

ClanCL0098SPOUT

External Links

ECOD PDB View: 5CO4 RCSB PDB: 5CO4 PDBe: 5CO4 UniProt: Q72G96

Downloads

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Drug annotations from DrugDomain.