ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5freB1 - ECOD Domain | ECOD

ECOD/Domains/e5freB1

e5freB1

UID: 001867083

PDB

Range: B:1-189
PDB: 5FRE chain B(all domains)
UniProt: A0A0H2YQR1 (all domains)
Gene: nanI

Molecule: EXO-ALPHA-SIALIDASE

3D Structure

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Related Domains

Browse other domains in Sialidase →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupConcanavalin A-like(10.1)

TT-groupConcanavalin A-like lectins/glucanases(10.1.1)

FFamilySialidase(10.1.1.18)

Ligands

in contact, ≤ 4 Å

2-(2-{2-[2-(2-Methoxy-Ethoxy)-Ethoxy]-Ethoxy}-Ethoxy)-Ethanol1PG
drugDrugBank DB02042
Calcium ionCA
metal

+ 1 additive (Acetate)

Pfam Families

PF02973Sialidase

Sialidase, N-terminal domain

ClanCL0004Concanavalin

External Links

ECOD PDB View: 5FRE RCSB PDB: 5FRE PDBe: 5FRE UniProt: A0A0H2YQR1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

AcetateACT
DrugBank DB14511

Shown in the structure viewer. Drug annotations from DrugDomain.