ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5b0wD1 - ECOD Domain | ECOD

ECOD/Domains/e5b0wD1

e5b0wD1

UID: 001868018

PDB

Range: D:18-276
PDB: 5B0W chain D(all domains)

Molecule: Halorhodopsin

3D Structure

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Related Domains

Browse other domains in Bac_rhodopsin →

Classification

AArchitecturealpha bundles(a.7)

XX-groupFamily A G protein-coupled receptor-like(5001)

HH-groupFamily A G protein-coupled receptor-like(5001.1)

TT-groupFamily A G protein-coupled receptor-like(5001.1.1)

FFamilyBac_rhodopsin(5001.1.1.6)

Ligands

in contact, ≤ 4 Å

B-nonylglucosideBNG
drugDrugBank DB02451
IsoleucineILE
drugDrugBank DB00167
(2S)-2,3-bis{[(3R,7R)-3,7,11,15-tetramethylhexadecyl]oxy}propyl (2R)-2-hydroxy-3-[(hydroxyphosphinato)oxy]propyl phosphate

Pfam Families

PF01036Bac_rhodopsin

Bacteriorhodopsin-like protein

ClanCL0192GPCR_A

External Links

ECOD PDB View: 5B0W RCSB PDB: 5B0W PDBe: 5B0W

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB02293

RetinalRET

Shown in the structure viewer. Drug annotations from DrugDomain.