ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5f0eB1 - ECOD Domain | ECOD

ECOD/Domains/e5f0eB1

e5f0eB1

UID: 001868181

RepresentativePDB

Range: B:67-117
PDB: 5F0E chain B(all domains)
UniProt: O08795 (all domains)
Gene: Prkcsh

Molecule: Glucosidase 2 subunit beta

3D Structure

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Related Domains

Browse other domains in PRKCSH-like →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupEGF-like(389)

HH-groupLDL receptor-like module(389.3)

TT-groupLDL receptor-like module(389.3.1)

FFamilyPRKCSH-like(389.3.1.2)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal

+ 2 additives (Formic acid, Tetraethylene glycol)

Formic acidFMT
Tetraethylene glycolPG4

Pfam Families

PF12999PRKCSH-like

Glucosidase II beta subunit-like

External Links

ECOD PDB View: 5F0E RCSB PDB: 5F0E PDBe: 5F0E UniProt: O08795

Downloads

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within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.