ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5g0fA1 - ECOD Domain | ECOD

ECOD/Domains/e5g0fA1

e5g0fA1

UID: 001868260

PDB

Range: A:972-1081
PDB: 5G0F chain A(all domains)
UniProt: F8W4B7 (all domains)
Gene: hdac6

Molecule: HDAC6

3D Structure

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Related Domains

Browse other domains in zf-UBP →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRING/U-box-like(376)

HH-groupRING/U-box-like(376.1)

TT-groupRING/U-box(376.1.1)

FFamilyzf-UBP(376.1.1.5)

Ligands

in contact, ≤ 4 Å

GlycineGLY
drugDrugBank DB00145
NICKEL (II) IONNI
metal
Zinc ionZN

Pfam Families

Zn-finger in ubiquitin-hydrolases and other protein

ClanCL0229RING

External Links

ECOD PDB View: 5G0F RCSB PDB: 5G0F PDBe: 5G0F UniProt: F8W4B7

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.