ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5g0iA1 - ECOD Domain | ECOD

ECOD/Domains/e5g0iA1

e5g0iA1

UID: 001868263

PDB

Range: A:442-801
PDB: 5G0I chain A(all domains)
UniProt: F8W4B7 (all domains)
Gene: hdac6

Molecule: HDAC6

3D Structure

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Related Domains

Browse other domains in Hist_deacetyl →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupArginase/deacetylase(2006.1.5)

FFamilyHist_deacetyl(2006.1.5.2)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Potassium ionK
metal
Nexturastat aN4R
Zinc ionZN
metal

Shown in the structure viewer.

Pfam Families

PF00850Hist_deacetyl

Histone deacetylase domain

ClanCL0302Arginase

External Links

ECOD PDB View: 5G0I RCSB PDB: 5G0I PDBe: 5G0I UniProt: F8W4B7

Downloads

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Drug annotations from DrugDomain.