ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ivvA1 - ECOD Domain | ECOD

ECOD/Domains/e5ivvA1

e5ivvA1

UID: 001868627

PDB

Range: A:12-413,A:436-588
PDB: 5IVV chain A(all domains)
UniProt: P29375 (all domains)
Gene: KDM5A

Molecule: Lysine-specific demethylase 5A

3D Structure

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Related Domains

Browse other domains in JmjC,JmjN →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyJmjC,JmjN(10.12.1.10)

Ligands

in contact, ≤ 4 Å

3-[(1-methyl-1H-pyrrolo[2,3-b]pyridin-3-yl)amino]pyridine-4-carboxylic acid6EN
MANGANESE (II) IONMN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

JmjC domain, hydroxylase

ClanCL0029Cupin

jmjN domain

ClanCL0029Cupin

External Links

ECOD PDB View: 5IVV RCSB PDB: 5IVV PDBe: 5IVV UniProt: P29375

Downloads

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