ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ivyA1 - ECOD Domain | ECOD

ECOD/Domains/e5ivyA1

e5ivyA1

UID: 001868628

PDB

Range: A:12-413,A:436-588
PDB: 5IVY chain A(all domains)
UniProt: P29375 (all domains)
Gene: KDM5A

Molecule: Lysine-specific demethylase 5A

3D Structure

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Related Domains

Browse other domains in JmjC,JmjN →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyJmjC,JmjN(10.12.1.10)

Ligands

in contact, ≤ 4 Å

3-{[(4-chlorophenyl)acetyl]amino}pyridine-4-carboxylic acid6EO
MANGANESE (II) IONMN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

JmjC domain, hydroxylase

ClanCL0029Cupin

jmjN domain

ClanCL0029Cupin

External Links

ECOD PDB View: 5IVY RCSB PDB: 5IVY PDBe: 5IVY UniProt: P29375

Downloads

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