ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5j2qA4 - ECOD Domain | ECOD

ECOD/Domains/e5j2qA4

e5j2qA4

UID: 001869474

PDB

Range: A:1-239
PDB: 5J2Q chain A(all domains)
UniProt: P04585 (all domains)
Gene: gag-pol

Molecule: HIV-1 reverse transcriptase p66 subunit

3D Structure

Loading viewer...

Related Domains

Browse other domains in RVT_1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyRVT_1(304.48.1.1)

Ligands

in contact, ≤ 4 Å

2'-deoxy-4'-ethynyl-2-fluoroadenosine 5'-(dihydrogen phosphate)6FM
within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Reverse transcriptase (RNA-dependent DNA polymerase)

ClanCL0027RdRP

External Links

ECOD PDB View: 5J2Q RCSB PDB: 5J2Q PDBe: 5J2Q UniProt: P04585

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure