ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5d4vB1 - ECOD Domain | ECOD

ECOD/Domains/e5d4vB1

e5d4vB1

UID: 001870477

RepresentativePDB

Range: B:9-268
PDB: 5D4V chain B(all domains)
UniProt: Q57913 (all domains)
Gene: hcgC

Molecule: Uncharacterized protein MJ0489

3D Structure

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Related Domains

Browse other domains in HcgC →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamilyHcgC(2003.1.1.54)

Ligands

in contact, ≤ 4 Å

S-adenosyl-L-homocysteineSAH
drugDrugBank DB01752
5'-O-[(R)-[(3,6-dimethyl-2-oxo-1,2-dihydropyridin-4-yl)oxy](hydroxy)phosphoryl]guanosineYGP

+ 1 additive (Sulfate ion)

Pfam Families

FeGP cofactor biosynthesis protein, methyltransferase HcgC

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5D4V RCSB PDB: 5D4V PDBe: 5D4V UniProt: Q57913

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ionSO4

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.