ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5jipA1 - ECOD Domain | ECOD

ECOD/Domains/e5jipA1

e5jipA1

UID: 001870502

RepresentativePDB

Range: A:4-229
PDB: 5JIP chain A(all domains)
UniProt: O06496 (all domains)
Gene: sleM

Molecule: Cortical-lytic enzyme

3D Structure

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Related Domains

Browse other domains in Glyco_hydro_25 →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyGlyco_hydro_25(2002.1.1.55)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

+ 1 additive (2-(N-morpholino)ethanesulfonic acid)

2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814

Shown in the structure viewer.

Pfam Families

PF01183Glyco_hydro_25

Glycosyl hydrolases family 25

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 5JIP RCSB PDB: 5JIP PDBe: 5JIP UniProt: O06496

Downloads

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Drug annotations from DrugDomain.