ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5k8kA1 - ECOD Domain | ECOD

ECOD/Domains/e5k8kA1

e5k8kA1

UID: 001870507

RepresentativePDB

Range: A:2-237
PDB: 5K8K chain A(all domains)
UniProt: P44046 (all domains)
Gene: lpxH

Molecule: UDP-2,3-diacylglucosamine hydrolase

3D Structure

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Related Domains

Browse other domains in Metallophos →

Classification

AArchitecturea+b four layers(a.13)

XX-groupCarbon-nitrogen hydrolase-like(246)

HH-groupMetallo-dependent phosphatases(246.2)

TT-groupMetallo-dependent phosphatases(246.2.1)

FFamilyMetallophos(246.2.1.1)

Ligands

in contact, ≤ 4 Å

(R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATELP5
MANGANESE (II) IONMN
metal

+ 2 additives (Acetate, Glycerin)

Pfam Families

PF00149Metallophos

Calcineurin-like phosphoesterase

ClanCL0163Calcineurin

External Links

ECOD PDB View: 5K8K RCSB PDB: 5K8K PDBe: 5K8K UniProt: P44046

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Acetate

DrugBank DB14511

GlycerinGOL

DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.