ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5dduB1 - ECOD Domain | ECOD

ECOD/Domains/e5dduB1

e5dduB1

UID: 001870742

PDB

Range: B:6-403
PDB: 5DDU chain B(all domains)
UniProt: H8Y6N2 (all domains)

Molecule: CrmG

3D Structure

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Related Domains

Browse other domains in Aminotran_3 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPLP-dependent transferases(7577)

HH-groupPLP-dependent transferases(7577.1)

TT-groupPLP-dependent transferases(7577.1.1)

FFamilyAminotran_3(7577.1.1.2)

Ligands

in contact, ≤ 4 Å

Pyridoxamine-5'-PhosphatePMP
drugDrugBank DB02142

+ 2 additives (Glycerin, Triethylene glycol)

GlycerinGOL
DrugBank DB09462

Pfam Families

PF00202Aminotran_3

Aminotransferase class-III

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 5DDU RCSB PDB: 5DDU PDBe: 5DDU UniProt: H8Y6N2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Triethylene glycolPGE

DrugBank DB02327

Shown in the structure viewer. Drug annotations from DrugDomain.