ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5e1rB2 - ECOD Domain | ECOD

ECOD/Domains/e5e1rB2

e5e1rB2

UID: 001870804

PDB

Range: B:577-654,B:678-769
PDB: 5E1R chain B(all domains)
UniProt: B3STU4 (all domains)
Gene: pec2a1a

Molecule: 7S vicilin

3D Structure

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Related Domains

Browse other domains in Cupin_1 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyCupin_1(10.12.1.3)

Ligands

in contact, ≤ 4 Å

COPPER (II) IONCU
metal

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Shown in the structure viewer.

Pfam Families

PF00190Cupin_1

Cupin

ClanCL0029Cupin

External Links

ECOD PDB View: 5E1R RCSB PDB: 5E1R PDBe: 5E1R UniProt: B3STU4

Downloads

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Drug annotations from DrugDomain.