ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5exkE1 - ECOD Domain | ECOD

ECOD/Domains/e5exkE1

e5exkE1

UID: 001870832

PDB

Range: E:26-305
PDB: 5EXK chain E(all domains)
UniProt: P9WK91 (all domains)
Gene: lipA

Molecule: Lipoyl synthase

3D Structure

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Related Domains

Browse other domains in Radical_SAM,LIAS_N →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyRadical_SAM,LIAS_N(2002.1.1.127)

Ligands

in contact, ≤ 4 Å

MethionineMET
drugDrugBank DB00134
5'-DEOXYADENOSINE5AD
FE3-S4 CLUSTERF3S

Pfam Families

PF04055Radical_SAM

Radical SAM superfamily

ClanCL0036TIM_barrel

N-terminal domain of lipoyl synthase of Radical_SAM family

External Links

ECOD PDB View: 5EXK RCSB PDB: 5EXK PDBe: 5EXK UniProt: P9WK91

Downloads

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Iron/sulfur clusterSF4

+ 1 additive (Imidazole)

ImidazoleIMD
DrugBank DB03366

Shown in the structure viewer. Drug annotations from DrugDomain.