ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5hglF2 - ECOD Domain | ECOD

ECOD/Domains/e5hglF2

e5hglF2

UID: 001870878

PDB

Range: F:1-147
PDB: 5HGL chain F(all domains)
UniProt: P12493 (all domains)
Gene: gag

Molecule: Capsid protein P24

3D Structure

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Related Domains

Browse other domains in Gag_p24 →

Classification

AArchitecturealpha bundles(a.7)

XX-groupRetrovirus capsid protein(170)

HH-groupRetrovirus capsid protein N-terminal domain(170.2)

TT-groupRetrovirus capsid protein N-terminal domain(170.2.1)

FFamilyGag_p24(170.2.1.1)

Ligands

in contact, ≤ 4 Å

N-METHYL-NALPHA-[(2-METHYL-1H-INDOL-3-YL)ACETYL]-N-PHENYL-L-PHENYLALANINAMIDE1B0
Chloride ionCL

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00607Gag_p24

gag protein p24 N-terminal domain

ClanCL0148Viral_Gag

External Links

ECOD PDB View: 5HGL RCSB PDB: 5HGL PDBe: 5HGL UniProt: P12493

Downloads

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