ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5jneA2 - ECOD Domain | ECOD

ECOD/Domains/e5jneA2

e5jneA2

UID: 001870958

PDB

Range: A:315-444
PDB: 5JNE chain A(all domains)
UniProt: Q04195 (all domains)
Gene: SIZ1

Molecule: E3 SUMO-protein ligase SIZ1,Ubiquitin-like protein SMT3

3D Structure

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Related Domains

Browse other domains in zf-MIZ →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRING/U-box-like(376)

HH-groupRING/U-box-like(376.1)

TT-groupRING/U-box(376.1.1)

FFamilyzf-MIZ(376.1.1.6)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

MIZ/SP-RING zinc finger

ClanCL0229RING

External Links

ECOD PDB View: 5JNE RCSB PDB: 5JNE PDBe: 5JNE UniProt: Q04195

Downloads

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