ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5jneE2 - ECOD Domain | ECOD

ECOD/Domains/e5jneE2

e5jneE2

UID: 001870961

PDB

Range: E:315-444
PDB: 5JNE chain E(all domains)
UniProt: Q04195 (all domains)
Gene: SIZ1

Molecule: E3 SUMO-protein ligase SIZ1,Ubiquitin-like protein SMT3

3D Structure

Loading viewer...

Related Domains

Browse other domains in zf-MIZ →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRING/U-box-like(376)

HH-groupRING/U-box-like(376.1)

TT-groupRING/U-box(376.1.1)

FFamilyzf-MIZ(376.1.1.6)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

MIZ/SP-RING zinc finger

ClanCL0229RING

External Links

ECOD PDB View: 5JNE RCSB PDB: 5JNE PDBe: 5JNE UniProt: Q04195

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure