ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5d78A1 - ECOD Domain | ECOD

ECOD/Domains/e5d78A1

e5d78A1

UID: 001871382

PDB

Range: A:313-387
PDB: 5D78 chain A(all domains)
UniProt: P38760 (all domains)
Gene: MIP6

Molecule: RNA-binding protein MIP6

3D Structure

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Related Domains

Browse other domains in RRM_1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupRNA-binding domain, RBD(304.9)

TT-groupRNA-binding domain, RBD(304.9.1)

FFamilyRRM_1(304.9.1.1)

Ligands

in contact, ≤ 4 Å

MercaptoethanolBME
drugDrugBank DB03345

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer.

Pfam Families

RNA recognition motif

ClanCL0221RRM

External Links

ECOD PDB View: 5D78 RCSB PDB: 5D78 PDBe: 5D78 UniProt: P38760

Downloads

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Drug annotations from DrugDomain.