ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5kr7B1 - ECOD Domain | ECOD

ECOD/Domains/e5kr7B1

e5kr7B1

UID: 001871786

PDB

Range: B:10-348
PDB: 5KR7 chain B(all domains)
UniProt: Q9H3R0 (all domains)
Gene: KDM4C

Molecule: Lysine-specific demethylase 4C

3D Structure

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Related Domains

Browse other domains in JmjC,JmjN →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyJmjC,JmjN(10.12.1.10)

Ligands

in contact, ≤ 4 Å

6-ethyl-2,5-dimethyl-7-oxidanylidene-4~{H}-pyrazolo[1,5-a]pyrimidine-3-carbonitrile6X9
Chloride ionCL
FE (II) IONFE2

Pfam Families

JmjC domain, hydroxylase

ClanCL0029Cupin

jmjN domain

ClanCL0029Cupin

External Links

ECOD PDB View: 5KR7 RCSB PDB: 5KR7 PDBe: 5KR7 UniProt: Q9H3R0

Downloads

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metal

Zinc ionZN

metal

Shown in the structure viewer. Drug annotations from DrugDomain.