ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5lf1Y1 - ECOD Domain | ECOD

ECOD/Domains/e5lf1Y1

e5lf1Y1

UID: 001871985

PDB

Range: Y:1-201
PDB: 5LF1 chain Y(all domains)
UniProt: P28074 (all domains)
Gene: PSMB5

Molecule: Proteasome subunit beta type-5

3D Structure

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Related Domains

Browse other domains in Proteasome →

Classification

AArchitecturea+b four layers(a.13)

XX-groupNtn/PP2C(210)

HH-groupNtn(210.1)

TT-groupProteasome subunits(210.1.1)

FFamilyProteasome(210.1.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Magnesium ionMG
metal
~{N}-[(2~{S})-1-[[(2~{S},3~{R},4~{S})-2,6-dimethyl-1,2,3-tris(oxidanyl)heptan-4-yl]amino]-3-oxidanyl-1-oxidanylidene-propan-2-yl]-6-methyl-heptanamide6VC

Pfam Families

PF00227Proteasome

Proteasome subunit

ClanCL0052NTN

External Links

ECOD PDB View: 5LF1 RCSB PDB: 5LF1 PDBe: 5LF1 UniProt: P28074

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

within 5 Å only

+ 1 additive (Pentaethylene glycol)

Pentaethylene glycol1PE

Shown in the structure viewer. Drug annotations from DrugDomain.