ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5lf6Y1 - ECOD Domain | ECOD

ECOD/Domains/e5lf6Y1

e5lf6Y1

UID: 001872069

PDB

Range: Y:6-206
PDB: 5LF6 chain Y(all domains)
UniProt: P28074 (all domains)
Gene: PSMB5

Molecule: Proteasome subunit beta type-5

3D Structure

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Related Domains

Browse other domains in Proteasome →

Classification

AArchitecturea+b four layers(a.13)

XX-groupNtn/PP2C(210)

HH-groupNtn(210.1)

TT-groupProteasome subunits(210.1.1)

FFamilyProteasome(210.1.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Magnesium ionMG
metal

+ 1 additive (Pentaethylene glycol)

Pentaethylene glycol1PE

Pfam Families

PF00227Proteasome

Proteasome subunit

ClanCL0052NTN

External Links

ECOD PDB View: 5LF6 RCSB PDB: 5LF6 PDBe: 5LF6 UniProt: P28074

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.