ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3am9B3 - ECOD Domain | ECOD

ECOD/Domains/e3am9B3

e3am9B3

UID: 001872664

PDB

Range: B:695-954
PDB: 3AM9 chain B(all domains)
UniProt: P80457 (all domains)
Gene: XDH

Molecule: Xanthine dehydrogenase/oxidase

3D Structure

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Related Domains

Browse other domains in MoCoBD_1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupMocoBD/DmpA-related(231)

HH-groupMocoBD/DmpA-related(231.1)

TT-groupMolybdenum cofactor-binding domain(231.1.1)

FFamilyMoCoBD_1(231.1.1.1)

Ligands

in contact, ≤ 4 Å

Dioxo(sulfanyl)molybdenumMOS
drugDrugBank DB03328
Calcium ionCA
metal
FE2/S2 (INORGANIC) CLUSTER

Pfam Families

PF02738MoCoBD_1

Molybdopterin cofactor-binding domain

ClanCL0635DmpA_ArgJ

External Links

ECOD PDB View: 3AM9 RCSB PDB: 3AM9 PDBe: 3AM9 UniProt: P80457

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

4-[5-(2,6-dioxo-1,2,3,6-tetrahydropyridin-4-yl)-1H-1,2,4-triazol-3-yl]-6-oxo-1,6-dihydropyridine-2-carbonitrileFYO

PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTERMTE

+ 2 additives (Glycerin, Bicarbonate ion)

GlycerinGOL
DrugBank DB09462
Bicarbonate ionBCT

Shown in the structure viewer. Drug annotations from DrugDomain.