ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3dmgA1 - ECOD Domain | ECOD

ECOD/Domains/e3dmgA1

e3dmgA1

UID: 001873092

PDB

Range: A:196-373
PDB: 3DMG chain A(all domains)
UniProt: Q5SKW0 (all domains)
Gene: TTHA0533

Molecule: Probable ribosomal RNA small subunit methyltransferase

3D Structure

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Related Domains

Browse other domains in MTS →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyMTS(2003.1.5.46)

Ligands

in contact, ≤ 4 Å

S-adenosyl-L-homocysteineSAH
drugDrugBank DB01752

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer.

Pfam Families

Methyltransferase small domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 3DMG RCSB PDB: 3DMG PDBe: 3DMG UniProt: Q5SKW0

Downloads

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Drug annotations from DrugDomain.