ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4n8yB1 - ECOD Domain | ECOD

ECOD/Domains/e4n8yB1

e4n8yB1

UID: 001874132

PDB

Range: B:23-141,B:232-322
PDB: 4N8Y chain B(all domains)
UniProt: A5E8D2 (all domains)

Molecule: Putative TRAP-type C4-dicarboxylate transport system, binding periplasmic protein (DctP subunit)

3D Structure

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Related Domains

Browse other domains in DctP →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyDctP(7523.1.1.16)

Ligands

in contact, ≤ 4 Å

alpha-D-galacturonic acidADA
drugDrugBank DB03511
beta-D-Galactopyranuronic acidGTR
drugDrugBank DB03652

Shown in the structure viewer.

Pfam Families

Bacterial extracellular solute-binding protein, family 7

ClanCL0177PBP

External Links

ECOD PDB View: 4N8Y RCSB PDB: 4N8Y PDBe: 4N8Y UniProt: A5E8D2

Downloads

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Drug annotations from DrugDomain.