ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2vpoB2 - ECOD Domain | ECOD

ECOD/Domains/e2vpoB2

e2vpoB2

UID: 001874925

PDB

Range: B:1-120,B:210-311
PDB: 2VPO chain B(all domains)
UniProt: E1VBK1 (all domains)
Gene: teaA

Molecule: PERIPLASMIC SUBSTRATE BINDING PROTEIN

3D Structure

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Related Domains

Browse other domains in DctP →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyDctP(7523.1.1.16)

Ligands

in contact, ≤ 4 Å

(4S,5S)-5-HYDROXY-2-METHYL-1,4,5,6-TETRAHYDROPYRIMIDINE-4-CARBOXYLIC ACID6CS
Magnesium ionMG
metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Bacterial extracellular solute-binding protein, family 7

ClanCL0177PBP

External Links

ECOD PDB View: 2VPO RCSB PDB: 2VPO PDBe: 2VPO UniProt: E1VBK1

Downloads

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