ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5fg0B1 - ECOD Domain | ECOD

ECOD/Domains/e5fg0B1

e5fg0B1

UID: 001877241

PDB

Range: B:14-185,B:205-420
PDB: 5FG0 chain B(all domains)
UniProt: Q04781 (all domains)
Gene: RKR1

Molecule: E3 ubiquitin-protein ligase listerin

3D Structure

Loading viewer...

Related Domains

Browse other domains in Ltn1_1st →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyLtn1_1st(109.4.1.299)

Ligands

in contact, ≤ 4 Å

Potassium ionK
metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF22958Ltn1_1st

E3 ubiquitin-protein ligase listerin, N-terminal domain

ClanCL0020TPR

External Links

ECOD PDB View: 5FG0 RCSB PDB: 5FG0 PDBe: 5FG0 UniProt: Q04781

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure