ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5dkaB1 - ECOD Domain | ECOD

ECOD/Domains/e5dkaB1

e5dkaB1

UID: 001877390

PDB

Range: B:33-92
PDB: 5DKA chain B(all domains)
UniProt: Q96EQ8 (all domains)
Gene: RNF125

Molecule: E3 ubiquitin-protein ligase RNF125

3D Structure

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Related Domains

Browse other domains in zf-C3HC4_2 →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRING/U-box-like(376)

HH-groupRING/U-box-like(376.1)

TT-groupRING/U-box(376.1.1)

FFamilyzf-C3HC4_2(376.1.1.23)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Magnesium ionMG
metal
Zinc ionZN
metal

Shown in the structure viewer.

Pfam Families

PF13923zf-C3HC4_2

Zinc finger, C3HC4 type (RING finger)

ClanCL0229RING

External Links

ECOD PDB View: 5DKA RCSB PDB: 5DKA PDBe: 5DKA UniProt: Q96EQ8

Downloads

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Drug annotations from DrugDomain.