ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5dkaB2 - ECOD Domain | ECOD

ECOD/Domains/e5dkaB2

e5dkaB2

UID: 001877391

PDB

Range: B:93-128
PDB: 5DKA chain B(all domains)
UniProt: Q96EQ8 (all domains)
Gene: RNF125

Molecule: E3 ubiquitin-protein ligase RNF125

3D Structure

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Related Domains

Browse other domains in zf_C2HC_14 →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupbeta-beta-alpha zinc fingers(386)

HH-groupbeta-beta-alpha zinc fingers(386.1)

TT-groupbeta-beta-alpha zinc fingers(386.1.1)

FFamilyzf_C2HC_14(386.1.1.48)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Magnesium ionMG
metal
Zinc ionZN
metal

Shown in the structure viewer.

Pfam Families

PF18574zf_C2HC_14

C2HC Zing finger domain

ClanCL0361C2H2-zf

External Links

ECOD PDB View: 5DKA RCSB PDB: 5DKA PDBe: 5DKA UniProt: Q96EQ8

Downloads

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Drug annotations from DrugDomain.