ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ggkA1 - ECOD Domain | ECOD

ECOD/Domains/e5ggkA1

e5ggkA1

UID: 001877730

PDB

Range: A:97-249
PDB: 5GGK chain A(all domains)
UniProt: Q8WZA1 (all domains)
Gene: POMGNT1

Molecule: Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

3D Structure

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Related Domains

Browse other domains in ILEI →

Classification

AArchitecturea+b two layers(a.11)

XX-groupFAM3 superfamily(3570)

HH-groupFAM3 superfamily(3570.1)

TT-groupFAM3 superfamily(3570.1.1)

FFamilyILEI(3570.1.1.1)

Ligands

in contact, ≤ 4 Å

4-nitrophenyl beta-D-mannopyranosideMBE

+ 2 additives (Glycerin, 1,2-ETHANEDIOL)

GlycerinGOL
DrugBank DB09462
1,2-ETHANEDIOLEDO

Pfam Families

Interleukin-like EMT inducer

External Links

ECOD PDB View: 5GGK RCSB PDB: 5GGK PDBe: 5GGK UniProt: Q8WZA1

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.