ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5er0D3 - ECOD Domain | ECOD

ECOD/Domains/e5er0D3

e5er0D3

UID: 001878589

PDB

Range: D:1-119,D:241-319
PDB: 5ER0 chain D(all domains)
UniProt: Q03Q85 (all domains)
Gene: LVIS_1558

Molecule: NADH oxidase

3D Structure

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Related Domains

Browse other domains in Pyr_redox_2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupFAD/NAD(P)-binding domain(2003.1.2)

FFamilyPyr_redox_2(2003.1.2.24)

Ligands

in contact, ≤ 4 Å

Flavin adenine dinucleotideFAD
drugDrugBank DB03147
OxygenOXY
drugDrugBank DB09140

+ 1 additive (1,2-ETHANEDIOL)

Pfam Families

PF07992Pyr_redox_2

Pyridine nucleotide-disulphide oxidoreductase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5ER0 RCSB PDB: 5ER0 PDBe: 5ER0 UniProt: Q03Q85

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.