ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4zdpD2 - ECOD Domain | ECOD

ECOD/Domains/e4zdpD2

e4zdpD2

UID: 001878795

PDB

Range: D:21-332
PDB: 4ZDP chain D(all domains)
UniProt: Q9HD40 (all domains)
Gene: SEPSECS

Molecule: O-phosphoseryl-tRNA(Sec) selenium transferase

3D Structure

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Related Domains

Browse other domains in SepSecS →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPLP-dependent transferases(7577)

HH-groupPLP-dependent transferases(7577.1)

TT-groupPLP-dependent transferases(7577.1.1)

FFamilySepSecS(7577.1.1.13)

Ligands

in contact, ≤ 4 Å

(5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATEPLR

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF05889SepSecS

O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 4ZDP RCSB PDB: 4ZDP PDBe: 4ZDP UniProt: Q9HD40

Downloads

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