ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5iv8C1 - ECOD Domain | ECOD

ECOD/Domains/e5iv8C1

e5iv8C1

UID: 001879385

PDB

Range: C:225-781
PDB: 5IV8 chain C(all domains)
UniProt: C4T9I0 (all domains)
Gene: imp

Molecule: LPS biosynthesis protein

3D Structure

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Related Domains

Browse other domains in LptD →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOuter membrane meander beta-barrels(5084)

HH-groupLPS-assembly protein LptD(5084.10)

TT-groupLPS-assembly protein LptD(5084.10.1)

FFamilyLptD(5084.10.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive ((Hydroxyethyloxy)Tri(Ethyloxy)Octane)

(Hydroxyethyloxy)Tri(Ethyloxy)OctaneC8E
DrugBank DB04233

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

LPS transport system D

ClanCL0193MBB

External Links

ECOD PDB View: 5IV8 RCSB PDB: 5IV8 PDBe: 5IV8 UniProt: C4T9I0

Downloads

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