ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ivaA1 - ECOD Domain | ECOD

ECOD/Domains/e5ivaA1

e5ivaA1

UID: 001879388

RepresentativePDB

Range: A:39-645
PDB: 5IVA chain A(all domains)
UniProt: Q9I5U2 (all domains)
Gene: lptD

Molecule: LPS-assembly protein LptD

3D Structure

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Related Domains

Browse other domains in LptD,LptD_2 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOuter membrane meander beta-barrels(5084)

HH-groupLPS-assembly protein LptD(5084.10)

TT-groupLPS-assembly protein LptD(5084.10.1)

FFamilyLptD,LptD_2(5084.10.1.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive ((Hydroxyethyloxy)Tri(Ethyloxy)Octane)

(Hydroxyethyloxy)Tri(Ethyloxy)OctaneC8E
DrugBank DB04233

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

LPS transport system D

ClanCL0193MBB

LptD protein

ClanCL0193MBB

External Links

ECOD PDB View: 5IVA RCSB PDB: 5IVA PDBe: 5IVA UniProt: Q9I5U2

Downloads

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