ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5edlA1 - ECOD Domain | ECOD

ECOD/Domains/e5edlA1

e5edlA1

UID: 001883344

RepresentativePDB

Range: A:3-199
PDB: 5EDL chain A(all domains)
UniProt: O34738 (all domains)
Gene: ykoE

Molecule: Putative HMP/thiamine permease protein YkoE

3D Structure

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Related Domains

Browse other domains in ABC_cobalt →

Classification

AArchitecturealpha bundles(a.7)

XX-groupSpectrin repeat-like(604)

HH-groupS-component of energy-coupling factor (ECF) transporters(604.39)

TT-groupS-component of energy-coupling factor (ECF) transporters(604.39.1)

FFamilyABC_cobalt(604.39.1.4)

Ligands

in contact, ≤ 4 Å

[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoateMPG
drugDrugBank DB03831
ThiamineVIB
drugDrugBank DB00152

Shown in the structure viewer.

Pfam Families

PF09819ABC_cobalt

ABC-type cobalt transport system, permease component

External Links

ECOD PDB View: 5EDL RCSB PDB: 5EDL PDBe: 5EDL UniProt: O34738

Downloads

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Drug annotations from DrugDomain.