ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5d8hB2 - ECOD Domain | ECOD

ECOD/Domains/e5d8hB2

e5d8hB2

UID: 001883411

PDB

Range: B:9-113,B:190-215
PDB: 5D8H chain B(all domains)
UniProt: P54049 (all domains)
Gene: rpl10

Molecule: 50S ribosomal protein L10

3D Structure

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Related Domains

Browse other domains in Ribosomal_L10 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupRibosomal protein L10-like(304.60)

TT-groupRibosomal protein L10-like(304.60.1)

FFamilyRibosomal_L10(304.60.1.2)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal

+ 1 additive (Tromethamine)

TromethamineTRS
DrugBank DB03754

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00466Ribosomal_L10

Ribosomal protein L10

External Links

ECOD PDB View: 5D8H RCSB PDB: 5D8H PDBe: 5D8H UniProt: P54049

Downloads

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