ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5imtA1 - ECOD Domain | ECOD

ECOD/Domains/e5imtA1

e5imtA1

UID: 001883531

PDB

Range: A:418-527
PDB: 5IMT chain A(all domains)
UniProt: Q9LCB8 (all domains)
Gene: ily

Molecule: Intermedilysin

3D Structure

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Related Domains

Browse other domains in Thiol_cytolys_C →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupPerfringolysin O beta sandwich domain(11.15)

TT-groupPerfringolysin O beta sandwich domain(11.15.1)

FFamilyThiol_cytolys_C(11.15.1.1)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

+ 2 additives (Triethylene glycol, Sulfate ion)

Triethylene glycolPGE
DrugBank DB02327
Sulfate ion

Pfam Families

PF17440Thiol_cytolys_C

Thiol-activated cytolysin beta sandwich domain

External Links

ECOD PDB View: 5IMT RCSB PDB: 5IMT PDBe: 5IMT UniProt: Q9LCB8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.