ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5k8rA1 - ECOD Domain | ECOD

ECOD/Domains/e5k8rA1

e5k8rA1

UID: 001883767

PDB

Range: A:1-96
PDB: 5K8R chain A(all domains)
UniProt: Q9Y5G1 (all domains)
Gene: PCDHGB3

Molecule: Protocadherin gamma-B3

3D Structure

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Related Domains

Browse other domains in Cadherin_2 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyCadherin_2(11.1.1.110)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Chloride ionCL

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF08266Cadherin_2

Cadherin-like

ClanCL0159E-set

External Links

ECOD PDB View: 5K8R RCSB PDB: 5K8R PDBe: 5K8R UniProt: Q9Y5G1

Downloads

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