ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5jx2A2 - ECOD Domain | ECOD

ECOD/Domains/e5jx2A2

e5jx2A2

UID: 001884057

RepresentativePDB

Range: A:236-263,A:284-378
PDB: 5JX2 chain A(all domains)
UniProt: Q08255 (all domains)
Gene: mglB

Molecule: Glucose/galactose-binding lipoprotein

3D Structure

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Related Domains

Browse other domains in Peripla_BP_7 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupPeriplasmic binding protein-like I(2007.1.2)

FFamilyPeripla_BP_7(2007.1.2.14)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL)

2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOLBTB
within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF18610Peripla_BP_7

Periplasmic binding protein domain

ClanCL0144Periplas_BP

External Links

ECOD PDB View: 5JX2 RCSB PDB: 5JX2 PDBe: 5JX2 UniProt: Q08255

Downloads

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