ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5datQ21 - ECOD Domain | ECOD

ECOD/Domains/e5datQ21

e5datQ21

UID: 001884512

PDB

Range: Q2:2-106
PDB: 5DAT chain Q2(all domains)
UniProt: P0CX27 (all domains)
Gene: RPL42A

Molecule: 60S ribosomal protein L42-A

3D Structure

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Related Domains

Browse other domains in Ribosomal_L44 →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRubredoxin-like(375)

HH-groupRubredoxin-related(375.1)

TT-groupRubredoxin-related(375.1.1)

FFamilyRibosomal_L44(375.1.1.5)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
osmium (III) hexammineOHX
Zinc ionZN

Pfam Families

PF00935Ribosomal_L44

Ribosomal protein L44

ClanCL0167Zn_Beta_Ribbon

External Links

ECOD PDB View: 5DAT RCSB PDB: 5DAT PDBe: 5DAT UniProt: P0CX27

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.