ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5ergB2 - ECOD Domain | ECOD

ECOD/Domains/e5ergB2

e5ergB2

UID: 001885894

PDB

Range: B:79-285,B:332-378
PDB: 5ERG chain B(all domains)
UniProt: P46959 (all domains)
Gene: GCD14

Molecule: tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61

3D Structure

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Related Domains

Browse other domains in GCD14 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyGCD14(2003.1.5.69)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

tRNA methyltransferase complex GCD14 subunit

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5ERG RCSB PDB: 5ERG PDBe: 5ERG UniProt: P46959

Downloads

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