ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5t67A1 - ECOD Domain | ECOD

ECOD/Domains/e5t67A1

e5t67A1

UID: 001886381

PDB

Range: A:288-414
PDB: 5T67 chain A(all domains)
UniProt: B3TMQ9 (all domains)
Gene: KijD1

Molecule: Sugar 3-C-methyl transferase

3D Structure

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Related Domains

Browse other domains in Methyltransf_14 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamilyMethyltransf_14(2003.1.1.60)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
(2R,4S,6R)-4-amino-4,6-dimethyl-5-oxotetrahydro-2H-pyran-2-yl [(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)JHZ

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOL

Pfam Families

PF08484Methyltransf_14

C-methyltransferase C-terminal domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 5T67 RCSB PDB: 5T67 PDBe: 5T67 UniProt: B3TMQ9

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.