ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e5i57A2 - ECOD Domain | ECOD

ECOD/Domains/e5i57A2

e5i57A2

UID: 001886868

PDB

Range: A:3-143,A:249-287
PDB: 5I57 chain A(all domains)
UniProt: P35439 (all domains)
Gene: Grin1

Molecule: Glutamate receptor ionotropic, NMDA 1,Glutamate receptor ionotropic, NMDA 1

3D Structure

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Related Domains

Browse other domains in Lig_chan-Glu_bd →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyLig_chan-Glu_bd(7523.1.1.20)

Ligands

in contact, ≤ 4 Å

GlycineGLY
drugDrugBank DB00145
Glutamic acidGLU
drugDrugBank DB00142within 5 Å only

Shown in the structure viewer.

Pfam Families

PF10613Lig_chan-Glu_bd

Ligated ion channel L-glutamate- and glycine-binding site

ClanCL0177PBP

External Links

ECOD PDB View: 5I57 RCSB PDB: 5I57 PDBe: 5I57 UniProt: P35439

Downloads

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Drug annotations from DrugDomain.