ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5jtyA2 - ECOD Domain | ECOD

ECOD/Domains/e5jtyA2

e5jtyA2

UID: 001887010

PDB

Range: A:4-143,A:249-286
PDB: 5JTY chain A(all domains)
UniProt: P35439 (all domains)
Gene: Grin1

Molecule: Glutamate receptor ionotropic, NMDA 1,Glutamate receptor ionotropic, NMDA 1

3D Structure

Loading viewer...

Related Domains

Browse other domains in Lig_chan-Glu_bd →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyLig_chan-Glu_bd(7523.1.1.20)

Ligands

in contact, ≤ 4 Å

Glutamic acidGLU
drugDrugBank DB00142within 5 Å only
4-hydroxy-5,7-dimethylquinoline-2-carboxylic acid2JK
5-({[(3,4-difluorophenyl)sulfonyl]amino}methyl)-6-methyl-N-[(2-methyl-1,3-thiazol-5-yl)methyl]pyrazine-2-carboxamide

Pfam Families

PF10613Lig_chan-Glu_bd

Ligated ion channel L-glutamate- and glycine-binding site

ClanCL0177PBP

External Links

ECOD PDB View: 5JTY RCSB PDB: 5JTY PDBe: 5JTY UniProt: P35439

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Shown in the structure viewer. Drug annotations from DrugDomain.