ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e5kr1B1 - ECOD Domain | ECOD

ECOD/Domains/e5kr1B1

e5kr1B1

UID: 001887066

PDB

Range: B:1-99
PDB: 5KR1 chain B(all domains)
UniProt: V5YAB1 (all domains)
Gene: pol

Molecule: Protease PR5-DRV

3D Structure

Loading viewer...

Related Domains

Browse other domains in RVP →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyRVP(1.1.1.3)

Ligands

in contact, ≤ 4 Å

Darunavir017
drugDrugBank DB01264

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Retroviral aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 5KR1 RCSB PDB: 5KR1 PDBe: 5KR1 UniProt: V5YAB1

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure